Back to Skills
Scientific

pdb-database

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology…

pdb-database is an Agent Skill — a folder with a SKILL.md and any helper scripts that a coding agent loads on demand. Drop it in your skills directory and the agent picks it up the next time the task matches.

Everything on this page — the summary, the category and the how-to — is written by HowToPrompts; the link below goes to the original project.

CategoryScientific
/skill add pdb-database

How to use it

  1. Copy the skill folder into your agent's skills directory, or run the add command above.
  2. Reload the agent so it re-scans available skills.
  3. Trigger it by describing the task — the agent loads the skill when it matches.
Compiled and written by HowToPrompts from public sources.

Related in Scientific

aeonThis skill should be used for time series machine learning tasks including classification, regression, clusteralphafold-databaseAccess AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIanndataThis skill should be used when working with annotated data matrices in Python, particularly for single-cell gebenchling-integrationBenchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via APIastropyComprehensive Python library for astronomy and astrophysics. This skill should be used when working with astroadaptyvCloud laboratory platform for automated protein testing and validation. Use when designing proteins and needinbioservicesPrimary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, CharboretoInfer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).biopythonPrimary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), seqbiomniAutonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery,
← Back to Skills